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Research Engineer for Biomedical Data Modeling Infrastructure (RE1)

Research Engineer for Biomedical Data Modeling Infrastructure (RE1)

Barcelona Supercomputing Centerbarcelona, España
Hace 1 día
Descripción del trabajo

Context And Mission

We are looking for a research engineer who :

  • Is comfortable with benchmarking infrastructure for federated analysis and federated learning (not developing models or performing research on modeling).
  • Is able to contribute to current software development projects.
  • Is excited about developing software from scratch for biomedical research projects.

Key Duties

  • Software Development : Work alone and collaboratively to develop new software that helps the group reach its goals.
  • Software Maintenance : Work alone and collaboratively to maintain the group's software.
  • Infrastructure Tooling : Build Python microservices, Docker / CI pipelines, and REST endpoints.
  • Analytical Reporting : Create R / Python notebooks and / or interactive HTML reports for software and infrastructure checks.
  • CI / CD : Be able to adapt to a CI / CD culture and contribute to maintaining and arguing for it.
  • Collaboration & Compliance : Work with technical people, clinicians, and bioinformaticians in a professional and friendly manner.

    • Requirements

    Education

  • BSc / MSc in Computer Science, Bioinformatics, or a related field with proven experience.

    • Essential Knowledge and Professional Experience

  • Approximately 2 years of coding experience.
  • Coding and software development.

    • Additional Knowledge and Professional Experience

  • Python (FastAPI / Flask, pytest, etc.) for infrastructure, software, and API design.
  • SQL, Git, Linux, and familiarity with Docker / CI-CD.

    • Competences

    Exposure to healthcare and biomedical topics (tailored to the group\'s research).

  • Experience with REST / GraphQL schema design.
  • Experience with workflow managers (Nextflow, Airflow) or orchestrators (Kubernetes).
  • HPC or cloud know-how (OpenStack, AWS / GCP / Azure).
  • Exposure to privacy-enhancing technologies (synthetic data, differential privacy).

    • Conditions

  • The position will be located at BSC within the Life Sciences Department
  • We offer a part-time contract (20h / week), a good working environment, a highly stimulating environment with state-of-the-art infrastructure, flexible working hours, extensive training plan, restaurant tickets, private health insurance, support to the relocation procedures
  • Duration : Open-ended contract due to technical and scientific activities linked to the project and budget duration
  • Holidays : 23 paid vacation days plus 24th and 31st of December per our collective agreement
  • Salary : we offer a competitive salary commensurate with the qualifications and experience of the candidate and according to the cost of living in Barcelona
  • Starting date : 01 / 11 / 2025

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